There’s something truly magical about biting into a muffin that hides a luscious, creamy cheesecake center bursting with fresh, juicy blueberries. These Blueberry Cheesecake Stuffed Muffins are exactly that kind of treat—perfectly tender muffin exterior with a rich, tangy cheesecake surprise inside. Whether you’re looking for a delightful breakfast, a snack to brighten your afternoon, or a crowd-pleasing addition to your brunch spread, these muffins are sure to impress. With just a handful of simple ingredients and straightforward steps, you’ll soon have a batch of irresistible Blueberry Cheesecake Stuffed Muffins ready to enjoy!
Why It Deserves a Spot

If you love muffins and cheesecake, this recipe is your best friend. These Blueberry Cheesecake Stuffed Muffins offer the best of both worlds—moist, flavorful muffins with a creamy cheesecake center that melts in your mouth. The fresh blueberries add a pop of natural sweetness and a bit of tartness that balances perfectly with the richness of the cream cheese filling. Plus, the recipe is incredibly approachable, making it a fantastic choice for bakers of all skill levels. Whether you’re making them for a holiday gathering, a weekend treat, or just because, these muffins are sure to become a beloved classic in your recipe box.
What Goes In

- 1 cup all-purpose flour – The base for our tender muffin texture.
- 1/2 cup granulated sugar – Adds sweetness to the muffin batter.
- 1 tsp baking powder – Helps the muffins rise beautifully.
- 1/2 tsp baking soda – Works with the acidic ingredients for lift.
- 1/4 tsp salt – Enhances all the flavors.
- 1/2 cup unsalted butter, melted – Adds richness and moisture.
- 2 large eggs – Binds the ingredients and adds structure.
- 1/2 tsp vanilla extract – Brings warmth and depth to the flavor.
- 1/2 cup cream cheese, softened – The star of the cheesecake filling.
- 1/4 cup powdered sugar – Sweetens the cheesecake center without grit.
- 1 cup fresh blueberries – Juicy bursts of flavor in every bite.
Equipment Breakdown
- Muffin tin: Essential for shaping the muffins uniformly.
- Mixer or mixing bowls: For combining the batter and the cheesecake filling.
- Spoons or small scoop: To evenly distribute muffin batter and cheesecake filling.
- Whisk: For smooth batter and filling consistency.
- Cooling rack: To cool muffins evenly and prevent sogginess.
Directions: Blueberry Cheesecake Stuffed Muffins
Step 1: Preheat and prep
Preheat your oven to 350°F (175°C). Grease a muffin tin or line it with paper liners to prevent sticking.
Step 2: Mix dry ingredients
In a large bowl, whisk together the all-purpose flour, granulated sugar, baking powder, baking soda, and salt. This ensures even distribution of the leavening agents for perfectly risen muffins.
Step 3: Combine wet ingredients
In a separate bowl, beat the eggs lightly. Add the melted butter and vanilla extract, stirring until everything is well combined.
Step 4: Make the muffin batter
Pour the wet ingredients into the dry ingredients and gently fold them together. Take care not to overmix—just combine until the batter is smooth and uniform.
Step 5: Prepare the cheesecake filling
In a small bowl, mix the softened cream cheese and powdered sugar until creamy and smooth. This filling will give the muffins their signature creamy center.
Step 6: Assemble the muffins
Fill each muffin cup halfway with the muffin batter. Add about a teaspoon of the cheesecake filling on top, then sprinkle a few fresh blueberries over the filling. Cover the filling and blueberries with more muffin batter until the cups are about 3/4 full.
Step 7: Bake to perfection
Bake the muffins in the preheated oven for 20-25 minutes, or until a toothpick inserted into the muffin (not the cheesecake center) comes out clean. The muffins should be golden on top and spring back when lightly pressed.
Step 8: Cool and enjoy
Allow the muffins to cool in the tin for 5 minutes, then transfer them to a cooling rack. This helps them set and prevents sogginess on the bottom.
Dietary Customizations
- Make it dairy-free: Use plant-based cream cheese and dairy-free butter alternatives.
- Reduce sugar: Swap granulated and powdered sugars with coconut sugar or a sugar substitute.
- Gluten-free option: Substitute all-purpose flour with a gluten-free baking blend.
- Add a citrus twist: Incorporate lemon zest into the batter or filling for extra brightness.
If You’re Curious
Wondering how to get that perfect balance between the muffin and cheesecake? The key is to not overfill the muffin cups and to keep the cheesecake filling chilled before baking. This prevents it from melting into the batter and ensures a distinct creamy center.
Feel free to swap fresh blueberries with frozen ones if fresh aren’t in season. Just toss them in a bit of flour before adding to the batter to keep them from sinking.
For an extra special treat, try topping your muffins with a sprinkle of coarse sugar or a crumbly streusel topping for added texture.
Make Ahead Like a Pro
You can prepare these Blueberry Cheesecake Stuffed Muffins ahead of time by baking them and storing in an airtight container at room temperature for up to two days. For longer storage, keep them in the refrigerator for up to a week or freeze for up to three months. To freeze, wrap each muffin individually in plastic wrap and place in a freezer-safe bag.
When ready to enjoy, thaw overnight in the fridge or warm in the microwave for 15-20 seconds for that fresh-baked feel.
Blueberry Cheesecake Stuffed Muffins Q&A
Can I use frozen blueberries instead of fresh?
Absolutely! Frozen blueberries work well in this recipe. To prevent them from sinking, toss the frozen berries in a little flour before folding them into the muffin batter.
How do I prevent the cheesecake filling from leaking out during baking?
Make sure your cream cheese filling is well chilled and thickened before stuffing the muffins. Also, avoid overfilling the muffin cups; leave enough batter on top to seal in the cheesecake center.
Can I make these muffins vegan?
Yes! Replace eggs with flax eggs or a commercial egg replacer, use plant-based cream cheese, and substitute butter with a vegan butter alternative. Keep in mind the texture might differ slightly but will still be delicious.
What’s the best way to reheat these muffins?
For the best texture, reheat muffins in a toaster oven or conventional oven at 300°F (150°C) for 5-7 minutes. Alternatively, microwave them in short bursts (15-20 seconds) to avoid drying out.
Desserts to Finish
- Blueberry Muffin Top Crumble Cookies – For a crunchy, fruity cookie twist.
- Blueberry Lemon Cheesecake Swirl Cookies – Combining zesty lemon and creamy cheesecake in cookie form.
- Lemon Blueberry Cheesecake Bar Cookies – A bar cookie version packed with vibrant flavors.
Before You Go
Don’t forget to let your Blueberry Cheesecake Stuffed Muffins cool completely before slicing or storing to maintain their shape and texture. These muffins are amazing fresh but also make fantastic gifts or additions to any gathering. Once you try this recipe, you’ll find yourself coming back again and again for that perfect bite of blueberry and cheesecake bliss.
These muffins are a wonderful way to brighten your day with simple ingredients and a little baking love. Enjoy every delicious, creamy, fruity bite!
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Blueberry Cheesecake Stuffed Muffins
Ingredients
- 1 cup all-purpose flour
- 1/2 cup granulated sugar
- 1 tsp baking powder
- 1/2 tsp baking soda
- 1/4 tsp salt
- 1/2 cup unsalted butter melted
- 2 large eggs
- 1/2 tsp vanilla extract
- 1/2 cup cream cheese softened
- 1/4 cup powdered sugar
- 1 cup fresh blueberries
Instructions
Directions: Blueberry Cheesecake Stuffed Muffins
- Preheat your oven to 350°F (175°C). Grease a muffin tin or line it with paper liners to prevent sticking.
- In a large bowl, whisk together the all-purpose flour, granulated sugar, baking powder, baking soda, and salt. This ensures even distribution of the leavening agents for perfectly risen muffins.
- In a separate bowl, beat the eggs lightly. Add the melted butter and vanilla extract, stirring until everything is well combined.
- Pour the wet ingredients into the dry ingredients and gently fold them together. Take care not to overmix—just combine until the batter is smooth and uniform.
- In a small bowl, mix the softened cream cheese and powdered sugar until creamy and smooth. This filling will give the muffins their signature creamy center.
- Fill each muffin cup halfway with the muffin batter. Add about a teaspoon of the cheesecake filling on top, then sprinkle a few fresh blueberries over the filling. Cover the filling and blueberries with more muffin batter until the cups are about 3/4 full.
- Bake the muffins in the preheated oven for 20-25 minutes, or until a toothpick inserted into the muffin (not the cheesecake center) comes out clean. The muffins should be golden on top and spring back when lightly pressed.
- Allow the muffins to cool in the tin for 5 minutes, then transfer them to a cooling rack. This helps them set and prevents sogginess on the bottom.
Equipment
- Muffin Tin
- Mixer or mixing bowls
- Spoons or small scoop
- Whisk
- Cooling Rack
Notes
- Keep the cheesecake filling chilled before stuffing to prevent it from melting and leaking during baking.
- Use frozen blueberries tossed in flour as a substitute for fresh to avoid sinking in the batter.
- Store muffins in an airtight container at room temperature for up to 2 days, refrigerate up to a week, or freeze for up to 3 months.
