There’s something incredibly comforting about a warm, sweet cupcake fresh from the oven, and these Honey Cupcakes with Vanilla Frosting are no exception. With their moist texture and delightful flavor, they are a perfect treat for any occasion. The gentle sweetness of honey combined with the lightness of whole-wheat flour makes these cupcakes not only delicious but also a bit healthier than your average dessert. Whether you’re celebrating a special event or just indulging in an afternoon snack, these cupcakes will surely bring a smile to your face.
Why I Love This Recipe

Honey Cupcakes with Vanilla Frosting are a delightful twist on traditional cupcakes. The use of honey adds a unique flavor profile that’s both sweet and slightly floral, making them stand out from the crowd. I love how the addition of Greek yogurt keeps the cupcakes moist, and the whole-wheat flour gives them a wholesome touch. Plus, they are incredibly versatile and can be enjoyed year-round, whether served at a summer picnic or a cozy winter gathering. Each bite feels like a warm hug, and the creamy vanilla frosting is the perfect finishing touch.
What to Buy

To make these scrumptious Honey Cupcakes with Vanilla Frosting, here’s a list of what you’ll need:
- 1 1/2 cups white whole-wheat flour
- 1 teaspoon baking powder
- 1/2 teaspoon baking soda
- 3 tablespoons honey
- 1/2 teaspoon vanilla extract
- 1 large egg
- 1/2 cup plain Greek yogurt
- 2 1/2 tablespoons olive oil (can also use canola oil)
- 1/2 cup almond milk
- 1 tablespoon orange juice
- 1/2 cup apples, finely diced
- 1/2 cup reduced-fat cream cheese, softened
- 2 tablespoons raw honey (I recommend Honest Raw Honey)
- 1 teaspoon pure vanilla extract
Before You Start: Equipment

Before diving into baking, gather these essential tools:
- Mixing bowls: For combining ingredients.
- Measuring cups and spoons: Precision is key in baking.
- Whisk: Perfect for mixing the dry and wet ingredients.
- Rubber spatula: Great for folding in diced apples and combining mixtures.
- Cupcake pan: Essential for baking the cupcakes.
- Cupcake liners: To prevent sticking and for easy serving.
- Hand mixer or stand mixer: For making the frosting smooth and creamy.
Step-by-Step: Honey Cupcakes with Vanilla Frosting
Step 1: Preheat the Oven
Preheat your oven to 350°F (175°C). This ensures that your cupcakes bake evenly.
Step 2: Prepare the Cupcake Pan
Line a cupcake pan with cupcake liners to prevent sticking and make cleanup easier.
Step 3: Combine Dry Ingredients
In a medium bowl, whisk together 1 1/2 cups of white whole-wheat flour, 1 teaspoon of baking powder, and 1/2 teaspoon of baking soda. Set aside.
Step 4: Mix Wet Ingredients
In a large mixing bowl, combine 3 tablespoons of honey, 1/2 teaspoon of vanilla extract, and 1 large egg. Whisk until well combined. Then, add 1/2 cup of plain Greek yogurt, 2 1/2 tablespoons of olive oil, 1/2 cup of almond milk, and 1 tablespoon of orange juice. Mix until smooth.
Step 5: Combine Wet and Dry Mixtures
Gradually add the dry ingredients to the wet mixture, stirring gently until just combined. Be careful not to overmix!
Step 6: Fold in the Apples
Gently fold in 1/2 cup of finely diced apples until evenly distributed throughout the batter.
Step 7: Fill Cupcake Liners
Spoon the batter into the prepared cupcake liners, filling each about 2/3 full to allow for rising.
Step 8: Bake the Cupcakes
Place the cupcake pan in the preheated oven and bake for 18-20 minutes, or until a toothpick inserted into the center comes out clean.
Step 9: Cool the Cupcakes
Once baked, remove the cupcakes from the oven and let them cool in the pan for 5 minutes before transferring them to a wire rack to cool completely.
Step 10: Make the Vanilla Frosting
In a medium bowl, beat together 1/2 cup of softened reduced-fat cream cheese, 2 tablespoons of raw honey, and 1 teaspoon of pure vanilla extract until smooth and creamy.
Step 11: Frost the Cupcakes
Once the cupcakes are completely cool, use a knife or piping bag to frost each cupcake with the delicious vanilla frosting.
Spring to Winter: Ideas
These Honey Cupcakes with Vanilla Frosting are versatile and can be customized for any season. Here are some ideas to get you started:
- Add a sprinkle of cinnamon for a warm, cozy flavor in the winter.
- Top with fresh berries in the summer for a refreshing twist.
- Incorporate pumpkin puree in the fall for a seasonal flair.
- Drizzle with a bit of melted dark chocolate for a rich touch.
Flavor Logic
The combination of honey and vanilla creates a beautifully balanced flavor. Honey not only sweetens but also adds moisture, resulting in a tender cupcake. The Greek yogurt contributes to the richness and keeps the cupcakes from being too dense, while the whole-wheat flour adds a nutty undertone that complements the sweetness of the honey. The finely diced apples bring a burst of freshness and texture, making each bite interesting.
Make-Ahead & Storage
These Honey Cupcakes with Vanilla Frosting can be made ahead of time, making them perfect for busy schedules or party planning.
- Store the unfrosted cupcakes in an airtight container at room temperature for up to 2 days, or in the fridge for up to a week.
- Frost the cupcakes just before serving to maintain the freshness of the frosting.
- You can also freeze the unfrosted cupcakes for up to 3 months. Thaw in the refrigerator before frosting and serving.
Ask the Chef
Can I substitute the Greek yogurt with something else?
Yes! You can use sour cream or any dairy-free yogurt alternative if you prefer. Just ensure the consistency is similar to Greek yogurt for the best results.
What can I use instead of honey if I want a vegan option?
Consider using maple syrup or agave nectar as a substitute. Both provide a similar sweetness and moisture.
How do I make my cupcakes fluffier?
Make sure to not overmix the batter once you combine the wet and dry ingredients. Mixing just until combined helps keep the cupcakes light and fluffy.
Can I add other flavors to the frosting?
Absolutely! Feel free to experiment with different extracts like almond or lemon. You could also fold in some cocoa powder for a chocolatey twist!
If you enjoyed these Honey Cupcakes with Vanilla Frosting, check out some of our other favorites:
Next Steps
Now that you have the recipe for these delightful Honey Cupcakes with Vanilla Frosting, it’s time to gather your ingredients and start baking! Share your creations with friends and family, and don’t forget to take a moment to enjoy the process. Happy baking!

Honey Cupcakes with Vanilla Frosting
Ingredients
For the Cupcakes:
- 1.5 cups white whole-wheat flour
- 1 teaspoon baking powder
- 0.5 teaspoon baking soda
- 3 tablespoons honey
- 0.5 teaspoon vanilla extract
- 1 large egg
- 0.5 cup plain Greek yogurt
- 2.5 tablespoons olive oil (can also use canola oil)
- 0.5 cup almond milk
- 1 tablespoon orange juice
- 0.5 cup apples (finely diced)
For the Vanilla Frosting:
- 0.5 cup reduced-fat cream cheese (softened)
- 2 tablespoons raw honey (I recommend Honest Raw Honey)
- 1 teaspoon pure vanilla extract
Instructions
Instructions:
- Step 1: Preheat your oven to 350°F (175°C). This ensures that your cupcakes bake evenly.
- Step 2: Line a cupcake pan with cupcake liners to prevent sticking and make cleanup easier.
- Step 3: In a medium bowl, whisk together 1 1/2 cups of white whole-wheat flour, 1 teaspoon of baking powder, and 1/2 teaspoon of baking soda. Set aside.
- Step 4: In a large mixing bowl, combine 3 tablespoons of honey, 1/2 teaspoon of vanilla extract, and 1 large egg. Whisk until well combined. Then, add 1/2 cup of plain Greek yogurt, 2 1/2 tablespoons of olive oil, 1/2 cup of almond milk, and 1 tablespoon of orange juice. Mix until smooth.
- Step 5: Gradually add the dry ingredients to the wet mixture, stirring gently until just combined. Be careful not to overmix!
- Step 6: Gently fold in 1/2 cup of finely diced apples until evenly distributed throughout the batter.
- Step 7: Spoon the batter into the prepared cupcake liners, filling each about 2/3 full to allow for rising.
- Step 8: Place the cupcake pan in the preheated oven and bake for 18-20 minutes, or until a toothpick inserted into the center comes out clean.
- Step 9: Once baked, remove the cupcakes from the oven and let them cool in the pan for 5 minutes before transferring them to a wire rack to cool completely.
- Step 10: In a medium bowl, beat together 1/2 cup of softened reduced-fat cream cheese, 2 tablespoons of raw honey, and 1 teaspoon of pure vanilla extract until smooth and creamy.
- Step 11: Once the cupcakes are completely cool, use a knife or piping bag to frost each cupcake with the delicious vanilla frosting.
Equipment
- Mixing Bowls
- Measuring cups and spoons
- Whisk
- Rubber spatula
- Cupcake pan
- Cupcake liners
- Hand Mixer or Stand Mixer
Notes
- For a cozy winter flavor, add a sprinkle of cinnamon.
- Top with fresh berries in summer for a refreshing twist.
- Frost the cupcakes just before serving for best results.
